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Address review comments
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1 changed files with 14 additions and 2 deletions
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@ -1,12 +1,14 @@
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// UPPMAX Config Profile
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// UPPMAX Config Profile
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params {
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params {
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config_profile_description = 'UPPMAX (Rackham/Bianca) cluster profile provided by nf-core/configs.'
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// Description is overwritten for other clusters below
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config_profile_description = 'UPPMAX (Bianca) cluster profile provided by nf-core/configs.'
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config_profile_contact = 'Phil Ewels (@ewels)'
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config_profile_contact = 'Phil Ewels (@ewels)'
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config_profile_url = 'https://www.uppmax.uu.se/'
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config_profile_url = 'https://www.uppmax.uu.se/'
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project = null
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project = null
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clusterOptions = null
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clusterOptions = null
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schema_ignore_params = "genomes,input_paths,cluster-options,clusterOptions,project"
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schema_ignore_params = "genomes,input_paths,cluster-options,clusterOptions,project"
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save_reference = true
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save_reference = true
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// Defaults set for Bianca - other clusters set below
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max_memory = 500.GB
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max_memory = 500.GB
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max_cpus = 16
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max_cpus = 16
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max_time = 240.h
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max_time = 240.h
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@ -60,22 +62,32 @@ process {
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scratch = '$SNIC_TMP'
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scratch = '$SNIC_TMP'
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}
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}
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if (hostname.startsWith("s")) {
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// Cluster: Snowy
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// Caution: Bianca nodes will be project name-nodenumber, e.g. sens2021500-001
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// so cannot rely on just starting with 's'
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if (hostname ==~ "s[0-9][0-9]*") {
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params.max_time = 700.h
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params.max_time = 700.h
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params.max_memory = 3880.GB
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params.max_memory = 3880.GB
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params.config_profile_description = 'UPPMAX (Snowy) cluster profile provided by nf-core/configs.'
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params.config_profile_description = 'UPPMAX (Snowy) cluster profile provided by nf-core/configs.'
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}
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}
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// Cluster: Irma
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if (hostname.startsWith("i")) {
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if (hostname.startsWith("i")) {
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params.max_memory = 250.GB
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params.max_memory = 250.GB
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params.config_profile_description = 'UPPMAX (Irma) cluster profile provided by nf-core/configs.'
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params.config_profile_description = 'UPPMAX (Irma) cluster profile provided by nf-core/configs.'
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}
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}
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// Cluster: Rackham
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if (hostname.startsWith("r")) {
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if (hostname.startsWith("r")) {
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params.max_cpus = 20
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params.max_cpus = 20
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params.max_memory = 970.GB
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params.max_memory = 970.GB
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params.config_profile_description = 'UPPMAX (Rackham) cluster profile provided by nf-core/configs.'
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}
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}
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// Cluster: Bianca - set in initial params block above
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// Additional devel profile for running in devel queue
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// Run with `-profile upppmax,devel`
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profiles {
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profiles {
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devel {
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devel {
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params {
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params {
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