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Address review comments

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This commit is contained in:
Phil Ewels 2021-11-02 13:32:19 +01:00
parent 9a17fdb6d9
commit c842ca70a7
1 changed files with 14 additions and 2 deletions
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16
conf/uppmax.config
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@ -1,12 +1,14 @@
// UPPMAX Config Profile
params {
config_profile_description = 'UPPMAX (Rackham/Bianca) cluster profile provided by nf-core/configs.'
// Description is overwritten for other clusters below
config_profile_description = 'UPPMAX (Bianca) cluster profile provided by nf-core/configs.'
config_profile_contact = 'Phil Ewels (@ewels)'
config_profile_url = 'https://www.uppmax.uu.se/'
project = null
clusterOptions = null
schema_ignore_params = "genomes,input_paths,cluster-options,clusterOptions,project"
save_reference = true
// Defaults set for Bianca - other clusters set below
max_memory = 500.GB
max_cpus = 16
max_time = 240.h
@ -60,22 +62,32 @@ process {
scratch = '$SNIC_TMP'
}
if (hostname.startsWith("s")) {
// Cluster: Snowy
// Caution: Bianca nodes will be project name-nodenumber, e.g. sens2021500-001
// so cannot rely on just starting with 's'
if (hostname ==~ "s[0-9][0-9]*") {
params.max_time = 700.h
params.max_memory = 3880.GB
params.config_profile_description = 'UPPMAX (Snowy) cluster profile provided by nf-core/configs.'
}
// Cluster: Irma
if (hostname.startsWith("i")) {
params.max_memory = 250.GB
params.config_profile_description = 'UPPMAX (Irma) cluster profile provided by nf-core/configs.'
}
// Cluster: Rackham
if (hostname.startsWith("r")) {
params.max_cpus = 20
params.max_memory = 970.GB
params.config_profile_description = 'UPPMAX (Rackham) cluster profile provided by nf-core/configs.'
}
// Cluster: Bianca - set in initial params block above
// Additional devel profile for running in devel queue
// Run with `-profile upppmax,devel`
profiles {
devel {
params {