From c9749725855a601946d34c8ff80e93d8f14b253e Mon Sep 17 00:00:00 2001 From: lecorguille Date: Thu, 22 Oct 2020 23:23:56 +0200 Subject: [PATCH] Add ABiMS - side files --- .github/workflows/main.yml | 2 +- README.md | 1 + nfcore_custom.config | 1 + 3 files changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 2d3f9c4..dfb0782 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -16,7 +16,7 @@ jobs: needs: test_all_profiles strategy: matrix: - profile: ['awsbatch', 'bi','bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga_med', 'cfc', 'cfc_dev', 'crick', 'denbi_qbic', 'ebc', 'genotoul', 'genouest', 'gis', 'google', 'hebbe', 'icr_davros', 'kraken', 'mpcdf', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hpc', 'uppmax', 'utd_ganymede', 'uzh'] + profile: ['abims', 'awsbatch', 'bi','bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga_med', 'cfc', 'cfc_dev', 'crick', 'denbi_qbic', 'ebc', 'genotoul', 'genouest', 'gis', 'google', 'hebbe', 'icr_davros', 'kraken', 'mpcdf', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hpc', 'uppmax', 'utd_ganymede', 'uzh'] steps: - uses: actions/checkout@v1 - name: Install Nextflow diff --git a/README.md b/README.md index 1229c7e..a967049 100644 --- a/README.md +++ b/README.md @@ -94,6 +94,7 @@ See [`nf-core/configs/docs`](https://github.com/nf-core/configs/tree/master/docs Currently documentation is available for the following systems: +* [ABIMS](docs/abims.md) * [AWSBATCH](docs/awsbatch.md) * [BIGPURPLE](docs/bigpurple.md) * [BI](docs/bi.md) diff --git a/nfcore_custom.config b/nfcore_custom.config index cebbd52..2b3c419 100644 --- a/nfcore_custom.config +++ b/nfcore_custom.config @@ -10,6 +10,7 @@ //Please use a new line per include Config section to allow easier linting/parsing. Thank you. profiles { + abims { includeConfig "${params.custom_config_base}/conf/abims.config" } awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" } bi { includeConfig "${params.custom_config_base}/conf/bi.config" } bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }