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resolve #162 bug

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This commit is contained in:
Piotr Faba 2020-06-18 20:30:05 +02:00
parent f139750bf4
commit cb26bef3f3
1 changed files with 12 additions and 10 deletions
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22
conf/bi.config
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@ -3,16 +3,18 @@ params{
config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_url = 'https://www.boehringer-ingelheim.com/'
}
params.globalConfig = determine_global_config()
includeConfig params.globalConfig
params.globalConfig = set_global_config()
def determine_global_config() {
if( System.getenv('NXF_GLOBAL_CONFIG') == null)
{
def errorMessage = "ERROR: Environment variable NXF_GLOBAL_CONFIG is missing. Set it to point to global.config file."
System.err.println(errorMessage)
throw new Exception(errorMessage)
}
return System.getenv('NXF_GLOBAL_CONFIG')
def set_global_config() {
def config = System.getenv('NXF_GLOBAL_CONFIG')
if(config == null)
{
def errorMessage = "WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile."
System.err.println(errorMessage)
}else{
includeConfig config
}
return config
}