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resolve #162 bug

This commit is contained in:
Piotr Faba 2020-06-18 20:30:05 +02:00
parent f139750bf4
commit cb26bef3f3

View file

@ -3,16 +3,18 @@ params{
config_profile_contact = 'Alexander Peltzer (@apeltzer)' config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_url = 'https://www.boehringer-ingelheim.com/' config_profile_url = 'https://www.boehringer-ingelheim.com/'
} }
params.globalConfig = determine_global_config()
includeConfig params.globalConfig params.globalConfig = set_global_config()
def determine_global_config() {
if( System.getenv('NXF_GLOBAL_CONFIG') == null) def set_global_config() {
{ def config = System.getenv('NXF_GLOBAL_CONFIG')
def errorMessage = "ERROR: Environment variable NXF_GLOBAL_CONFIG is missing. Set it to point to global.config file." if(config == null)
System.err.println(errorMessage) {
throw new Exception(errorMessage) def errorMessage = "WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile."
} System.err.println(errorMessage)
return System.getenv('NXF_GLOBAL_CONFIG') }else{
includeConfig config
}
return config
} }