diff --git a/docs/sanger.md b/docs/sanger.md index f1e5c29..bb0e607 100644 --- a/docs/sanger.md +++ b/docs/sanger.md @@ -15,7 +15,7 @@ Nextflow manages each process as a separate job that is submitted to the cluster Nextflow shouldn't run directly on the submission node but on a compute node. To do so make a shell script with a similar structure to the following code and submit with `bsub < $PWD/my_script.sh` -``` +```bash #!/bin/bash #BSUB -o /path/to/a/log/dir/%J.o #BSUB -e /path/to/a/log/dir//%J.e @@ -44,4 +44,3 @@ if [[ $status -eq 0 ]]; then rm -r /path/to/some/dir/work fi ``` -