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Add singularity to PATH

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This commit is contained in:
Nathan Watson-Haigh 2022-03-13 07:39:31 +10:30
parent 2f0b022571
commit cc55026751
1 changed files with 1 additions and 0 deletions
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conf/sahmri.config
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@ -23,6 +23,7 @@ executor {
singularity { singularity {
enabled = true enabled = true
autoMounts = true autoMounts = true
beforeScript = 'export PATH=/apps/opt/singularity/latest/bin:${PATH}'
cacheDir = '/cancer/storage/shared/simg' cacheDir = '/cancer/storage/shared/simg'
} }
cleanup = true cleanup = true