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Add --nextclade_dataset params
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@ -13,6 +13,7 @@ params {
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// Please use 'MN908947.3' if possible because all primer sets are available / have been pre-prepared relative to that assembly
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fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_045512.2/GCF_009858895.2_ASM985889v3_genomic.200409.fna.gz'
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gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_045512.2/GCF_009858895.2_ASM985889v3_genomic.200409.gff.gz'
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nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/nextclade_sars-cov-2_MN908947_2022-01-05T19_54_31Z.tar.gz'
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nextclade_dataset_name = 'sars-cov-2'
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nextclade_dataset_reference = 'MN908947'
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nextclade_dataset_tag = '2022-01-05T19:54:31Z'
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@ -20,6 +21,7 @@ params {
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'MN908947.3' {
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fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.fna.gz'
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gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz'
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nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/nextclade_sars-cov-2_MN908947_2022-01-05T19_54_31Z.tar.gz'
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nextclade_dataset_name = 'sars-cov-2'
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nextclade_dataset_reference = 'MN908947'
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nextclade_dataset_tag = '2022-01-05T19:54:31Z'
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