From d1983f8acd15354160e60458355eee2cf75f9b56 Mon Sep 17 00:00:00 2001 From: Olga Botvinnik Date: Wed, 26 Jun 2019 17:56:26 -0700 Subject: [PATCH] Use new and improved GENCODE+ERCC annotation --- conf/czbiohub_aws.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/conf/czbiohub_aws.config b/conf/czbiohub_aws.config index af7707a..a89588b 100644 --- a/conf/czbiohub_aws.config +++ b/conf/czbiohub_aws.config @@ -65,13 +65,13 @@ params { genomes { 'GRCh38' { fasta = "${params.gencode_base}/human/v30/GRCh38.p12.genome.ERCC92.fa" - gtf = "${params.gencode_base}/human/v30/gencode.v30.annotation.ERCC92.gene_type.gtf" + gtf = "${params.gencode_base}/human/v30/gencode.v30.annotation.ERCC92.gtf" transcript_fasta = "${params.gencode_base}/human/v30/gencode.v30.transcripts.ERCC92.fa" star = "${params.gencode_base}/human/v30/STARIndex/" } 'GRCm38' { fasta = "${params.gencode_base}/mouse/vM21/GRCm38.p6.genome.ERCC92.fa" - gtf = "${params.gencode_base}/mouse/vM21/gencode.vM21.annotation.ERCC92.gene_type.gtf" + gtf = "${params.gencode_base}/mouse/vM21/gencode.vM21.annotation.ERCC92.gtf" transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa" } }