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Merge pull request #173 from jfy133/shh-eager-hops-update

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Remove now deprecated EAGER flag for HOPS profile
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James A. Fellows Yates 2020-07-20 11:34:49 +02:00 committed by GitHub
commit d38ffc289b
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conf/pipeline/eager/shh.config
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@ -76,7 +76,6 @@ profiles {
bwaalnn = 0.01 bwaalnn = 0.01
bwaalnl = 16 bwaalnl = 16
run_bam_filtering = true run_bam_filtering = true
bam_discard_unmapped = true
bam_unmapped_type = 'fastq' bam_unmapped_type = 'fastq'
run_metagenomic_screening = true run_metagenomic_screening = true
metagenomic_tool = 'malt' metagenomic_tool = 'malt'