From d39bec05dcf0016d720ea73744283150c9e410c1 Mon Sep 17 00:00:00 2001
From: Ramprasad Neethiraj <20065894+ramprasadn@users.noreply.github.com>
Date: Tue, 19 Apr 2022 13:21:51 +0200
Subject: [PATCH] fix typo

---
 conf/pipeline/raredisease/hasta.config | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/conf/pipeline/raredisease/hasta.config b/conf/pipeline/raredisease/hasta.config
index 56c1a97..4e00c56 100644
--- a/conf/pipeline/raredisease/hasta.config
+++ b/conf/pipeline/raredisease/hasta.config
@@ -7,11 +7,11 @@ process {
         cpus   = { check_max( 16      * task.attempt, 'cpus' ) }
         memory = { check_max( 80.GB   * task.attempt, 'memory' ) }
     }
-    withname: BCFTOOLS_VIEW {
+    withName: BCFTOOLS_VIEW {
         if (params.genome == 'GRCh37') {
             ext.args = '--output-type v --apply-filters PASS --exclude "INFO/clinical_genomics_mipAF > 0.40 | INFO/swegenAF > 0.40 | INFO/clingen_ngiAF > 0.40 | INFO/gnomad_svAF > 0.40 "'
         } else if (params.genome == 'GRCh38') {
-            ext.args = '--output-type v --apply-filters PASS --exclude "INFO/swegenAF > 0.40"'
+            ext.args = '--output-type v --apply-filters PASS --exclude "INFO/swegen_FRQ > 0.40"'
         }
         publishDir = [
             enabled: false,