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fix lint

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This commit is contained in:
Mei Wu 2021-09-27 16:11:18 +02:00
parent 06fac1dcfc
commit d3b92bad9d
1 changed files with 47 additions and 46 deletions
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93
.github/workflows/main.yml vendored
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@ -15,51 +15,52 @@ jobs:
name: Run ${{ matrix.profile }} profile
needs: test_all_profiles
strategy:
matrix:
profile:
- 'abims'
- 'aws_tower'
- 'awsbatch'
- 'bi'
- 'bigpurple'
- 'binac'
- 'biohpc_gen'
- 'cambridge'
- 'cbe'
- 'ccga_dx'
- 'ccga_med'
- 'cfc'
- 'cfc_dev'
- 'crick'
- 'denbi_qbic'
- 'ebc'
- 'eddie'
- 'eva'
- 'genotoul'
- 'genouest'
- 'gis'
- 'google'
- 'hebbe'
- 'icr_davros'
- 'ifb_core'
- 'imperial'
- 'imperial_mb'
- 'jax'
- 'lugh'
- 'mpcdf'
- 'munin'
- 'nu_genomics'
- 'oist'
- 'pasteur'
- 'phoenix'
- 'prince'
- 'sanger'
- 'seg_globe'
- 'uct_hpc'
- 'uppmax'
- 'utd_ganymede'
- 'utd_sysbio'
- 'uzh'
matrix:
profile:
- "abims"
- "aws_tower"
- "awsbatch"
- "bi"
- "bigpurple"
- "binac"
- "biohpc_gen"
- "cambridge"
- "cbe"
- "ccga_dx"
- "ccga_med"
- "cfc"
- "cfc_dev"
- "crick"
- "denbi_qbic"
- "ebc"
- "eddie"
- "eva"
- "genotoul"
- "genouest"
- "gis"
- "google"
- "hasta"
- "hebbe"
- "icr_davros"
- "ifb_core"
- "imperial"
- "imperial_mb"
- "jax"
- "lugh"
- "mpcdf"
- "munin"
- "nu_genomics"
- "oist"
- "pasteur"
- "phoenix"
- "prince"
- "sanger"
- "seg_globe"
- "uct_hpc"
- "uppmax"
- "utd_ganymede"
- "utd_sysbio"
- "uzh"
steps:
- uses: actions/checkout@v1
- name: Install Nextflow
@ -68,6 +69,6 @@ jobs:
sudo mv nextflow /usr/local/bin/
- name: Check ${{ matrix.profile }} profile
env:
SCRATCH: '~'
SCRATCH: "~"
NXF_GLOBAL_CONFIG: awsbatch.config
run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }}