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fix lint

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This commit is contained in:
Mei Wu 2021-09-27 16:11:18 +02:00
parent 06fac1dcfc
commit d3b92bad9d
1 changed files with 47 additions and 46 deletions
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93
.github/workflows/main.yml vendored
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@ -15,51 +15,52 @@ jobs:
name: Run ${{ matrix.profile }} profile name: Run ${{ matrix.profile }} profile
needs: test_all_profiles needs: test_all_profiles
strategy: strategy:
matrix: matrix:
profile: profile:
- 'abims' - "abims"
- 'aws_tower' - "aws_tower"
- 'awsbatch' - "awsbatch"
- 'bi' - "bi"
- 'bigpurple' - "bigpurple"
- 'binac' - "binac"
- 'biohpc_gen' - "biohpc_gen"
- 'cambridge' - "cambridge"
- 'cbe' - "cbe"
- 'ccga_dx' - "ccga_dx"
- 'ccga_med' - "ccga_med"
- 'cfc' - "cfc"
- 'cfc_dev' - "cfc_dev"
- 'crick' - "crick"
- 'denbi_qbic' - "denbi_qbic"
- 'ebc' - "ebc"
- 'eddie' - "eddie"
- 'eva' - "eva"
- 'genotoul' - "genotoul"
- 'genouest' - "genouest"
- 'gis' - "gis"
- 'google' - "google"
- 'hebbe' - "hasta"
- 'icr_davros' - "hebbe"
- 'ifb_core' - "icr_davros"
- 'imperial' - "ifb_core"
- 'imperial_mb' - "imperial"
- 'jax' - "imperial_mb"
- 'lugh' - "jax"
- 'mpcdf' - "lugh"
- 'munin' - "mpcdf"
- 'nu_genomics' - "munin"
- 'oist' - "nu_genomics"
- 'pasteur' - "oist"
- 'phoenix' - "pasteur"
- 'prince' - "phoenix"
- 'sanger' - "prince"
- 'seg_globe' - "sanger"
- 'uct_hpc' - "seg_globe"
- 'uppmax' - "uct_hpc"
- 'utd_ganymede' - "uppmax"
- 'utd_sysbio' - "utd_ganymede"
- 'uzh' - "utd_sysbio"
- "uzh"
steps: steps:
- uses: actions/checkout@v1 - uses: actions/checkout@v1
- name: Install Nextflow - name: Install Nextflow
@ -68,6 +69,6 @@ jobs:
sudo mv nextflow /usr/local/bin/ sudo mv nextflow /usr/local/bin/
- name: Check ${{ matrix.profile }} profile - name: Check ${{ matrix.profile }} profile
env: env:
SCRATCH: '~' SCRATCH: "~"
NXF_GLOBAL_CONFIG: awsbatch.config NXF_GLOBAL_CONFIG: awsbatch.config
run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }} run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }}