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Corrects profile grep

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Sven Fillinger 2019-03-08 11:58:37 +01:00
parent e401769698
commit d4cd9b1f0a
1 changed files with 1 additions and 1 deletions
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.travis.yml
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@ -26,4 +26,4 @@ env:
script: script:
# Run the pipeline with the test profile and test remote config # Run the pipeline with the test profile and test remote config
- grep -o "[a-z]*.config\"" ${TRAVIS_BUILD_DIR}/nfcore_custom.config | sed 's/.config\"//g' | cat | xargs -I {} nextflow run ${TRAVIS_BUILD_DIR}/configtest.nf -profile {} - grep "[a-z]*.config\"" ${TRAVIS_BUILD_DIR}/nfcore_custom.config | | tr -s ' ' | cut -d " " -f 2 | xargs -I {} nextflow run ${TRAVIS_BUILD_DIR}/configtest.nf -profile {}