From 75c1fd5cd9c4ee8cce5c1bbbd1e2b436a94f4b65 Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Tue, 26 Nov 2019 10:43:23 +0100 Subject: [PATCH 1/2] fix tests --- conf/awsbatch.config | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/conf/awsbatch.config b/conf/awsbatch.config index 978da56..89319c5 100644 --- a/conf/awsbatch.config +++ b/conf/awsbatch.config @@ -1,14 +1,16 @@ //Nextflow config file for running on AWS batch params { - config_profile_name = 'AWSBATCH' - config_profile_description = 'AWSBATCH Cloud Profile' + awsqueue = '' + awsregion = '' config_profile_contact = 'Alexander Peltzer (@apeltzer)' + config_profile_description = 'AWSBATCH Cloud Profile' + config_profile_name = 'AWSBATCH' config_profile_url = 'https://aws.amazon.com/batch/' + tracedir = './' } aws.region = params.awsregion process.executor = 'awsbatch' process.queue = params.awsqueue -executor.awscli = '/home/ec2-user/miniconda/bin/aws' -params.tracedir = './' \ No newline at end of file +executor.awscli = '/home/ec2-user/miniconda/bin/aws' \ No newline at end of file From 1ce8ce0c552ffa45a9bf4c57ae8dd40072b69cf8 Mon Sep 17 00:00:00 2001 From: Maxime Garcia Date: Tue, 26 Nov 2019 11:00:24 +0100 Subject: [PATCH 2/2] Apply suggestions from code review --- conf/awsbatch.config | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/conf/awsbatch.config b/conf/awsbatch.config index 89319c5..cf00a53 100644 --- a/conf/awsbatch.config +++ b/conf/awsbatch.config @@ -1,8 +1,8 @@ //Nextflow config file for running on AWS batch params { - awsqueue = '' - awsregion = '' + awsqueue = false + awsregion = 'eu-west-1' config_profile_contact = 'Alexander Peltzer (@apeltzer)' config_profile_description = 'AWSBATCH Cloud Profile' config_profile_name = 'AWSBATCH' @@ -13,4 +13,4 @@ params { aws.region = params.awsregion process.executor = 'awsbatch' process.queue = params.awsqueue -executor.awscli = '/home/ec2-user/miniconda/bin/aws' \ No newline at end of file +executor.awscli = '/home/ec2-user/miniconda/bin/aws'