millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Updated process names according to ampliseq main.nf

Browse source
This commit is contained in:
Emelie Nilsso 2020-11-25 17:50:30 +01:00
parent 37e7cfae2c
commit d61ed01d2d
1 changed files with 3 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
conf/pipeline/ampliseq/uppmax.config
View file

@ -11,12 +11,12 @@ process {
clusterOptions = { "-A $params.project -C fat -p node -N 1 -t 7-00:00:00 ${params.clusterOptions ?: ''}" } clusterOptions = { "-A $params.project -C fat -p node -N 1 -t 7-00:00:00 ${params.clusterOptions ?: ''}" }
} }
//"clfr_extract_seq" and "clfr_train" is the newer version, where database preparation is split in two to optimise resources //"classifier_extract_seq" and "classifier_train" is the newer version, where database preparation is split in two to optimise resources
withName: clfr_extract_seq { withName: classifier_extract_seq {
clusterOptions = { "-A $params.project -p core -n 1 -t 7-00:00:00 ${params.clusterOptions ?: ''}" } clusterOptions = { "-A $params.project -p core -n 1 -t 7-00:00:00 ${params.clusterOptions ?: ''}" }
} }
withName: clfr_train { withName: classifier_train {
clusterOptions = { "-A $params.project -C fat -p node -N 1 -t 24:00:00 ${params.clusterOptions ?: ''}" } clusterOptions = { "-A $params.project -C fat -p node -N 1 -t 24:00:00 ${params.clusterOptions ?: ''}" }
} }