From 381c60e7b76e5c3c53d5cc64c21e1ed57c671d8d Mon Sep 17 00:00:00 2001 From: phue Date: Thu, 5 Dec 2019 16:06:32 +0100 Subject: [PATCH 1/2] cbe: load singularity/3.4.1 --- conf/cbe.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/conf/cbe.config b/conf/cbe.config index 3332b1e..ea24e5b 100755 --- a/conf/cbe.config +++ b/conf/cbe.config @@ -7,7 +7,7 @@ params { process { executor = 'slurm' - module = 'singularity/3.2.1' + module = 'singularity/3.4.1' queue = { task.memory <= 170.GB ? 'c' : 'm' } clusterOptions = { task.time <= 8.h ? '--qos short': task.time <= 48.h ? '--qos medium' : '--qos long' } } From fa777180e68093d4b0ad8d889a767d3aaadda31b Mon Sep 17 00:00:00 2001 From: phue Date: Thu, 5 Dec 2019 23:46:25 +0100 Subject: [PATCH 2/2] cbe: map hostname --- nfcore_custom.config | 1 + 1 file changed, 1 insertion(+) diff --git a/nfcore_custom.config b/nfcore_custom.config index 90145b3..49e6328 100644 --- a/nfcore_custom.config +++ b/nfcore_custom.config @@ -49,6 +49,7 @@ profiles { params { // This is a groovy map, not a nextflow parameter set hostnames = [ + cbe: ['.cbe.vbc.ac.at'], crick: ['.thecrick.org'], genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'], genouest: ['.genouest.org'],