From fc8b1162c1df01a5f75f97aea51e697b142a9ad9 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Mon, 7 Jun 2021 10:48:35 +0200 Subject: [PATCH] Fix HOPS huamn ref path --- conf/pipeline/eager/shh.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/conf/pipeline/eager/shh.config b/conf/pipeline/eager/shh.config index 5046df0..9388ad0 100644 --- a/conf/pipeline/eager/shh.config +++ b/conf/pipeline/eager/shh.config @@ -164,7 +164,7 @@ profiles { params { config_profile_description = 'Rough HOPS screening MPI-SHH profile, provided by nf-core/configs.' fasta = '/projects1/Reference_Genomes/Human/HG19/hg19_complete.fasta' - bwa_index = '/projects1/Reference_Genomes/Human/HG19/hg19_complete.fasta' + bwa_index = '/projects1/Reference_Genomes/Human/HG19/' fasta_index = '/projects1/Reference_Genomes/Human/HG19/hg19_complete.fasta.fai' seq_dict = '/projects1/Reference_Genomes/Human/HG19/hg19_complete.dict' bwaalnn = 0.01