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Merge pull request #5 from apeltzer/add_more_configs

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Add Phoenix configs
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Harshil Patel 2018-11-26 23:41:56 +00:00 committed by GitHub
commit daa41d2dbf
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23
conf/phoenix.config Normal file
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@ -0,0 +1,23 @@
/*
* ----------------------------------------------------------------------------
* Nextflow config file for use with Singularity on Phoenix Cluster Adelaide
* ----------------------------------------------------------------------------
* Defines basic usage limits and singularity image id.
*/
singularity {
enabled = true
envWhitelist='SINGULARITY_BINDPATH'
autoMounts = true
}
process {
beforeScript = 'module load Singularity/2.5.2-GCC-5.4.0-2.26'
executor = 'slurm'
}
params {
max_memory = 128.GB
max_cpus = 32
max_time = 48.h
}

1
nfcore_custom.config
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@ -17,6 +17,7 @@ profiles {
crick { includeConfig "${config_base}/crick.config" } crick { includeConfig "${config_base}/crick.config" }
gis { includeConfig "${config_base}/gis.config" } gis { includeConfig "${config_base}/gis.config" }
hebbe { includeConfig "${config_base}/hebbe.config" } hebbe { includeConfig "${config_base}/hebbe.config" }
phoenix { includeConfig "${config_base}/pheonix.config" }
uct_hex { includeConfig "${config_base}/uct_hex.config" } uct_hex { includeConfig "${config_base}/uct_hex.config" }
uppmax_devel { includeConfig "${config_base}/uppmax.config" uppmax_devel { includeConfig "${config_base}/uppmax.config"
includeConfig "${config_base}/uppmax-devel.config" includeConfig "${config_base}/uppmax-devel.config"