diff --git a/conf/pipeline/sarek/sbc_sharc.config b/conf/pipeline/sarek/sbc_sharc.config index 95b3ee3..4ddf2ba 100644 --- a/conf/pipeline/sarek/sbc_sharc.config +++ b/conf/pipeline/sarek/sbc_sharc.config @@ -18,7 +18,7 @@ process { // error and retry handling errorStrategy = { task.exitStatus in [143,137,104,134,139,140,247] ? 'retry' : 'finish' } - maxRetries = 1 + maxRetries = 2 // process labels @@ -75,7 +75,7 @@ process { } withName:'GATK4_MARKDUPLICATES' { - memory = { check_max( 16.GB * task.attempt, 'memory' ) } + memory = { check_max( 20.GB * task.attempt, 'memory' ) } } withName:'FREEBAYES|SAMTOOLS_STATS|SAMTOOLS_INDEX|UNZIP' {