From dbb71161c5428e77d8c4f6f8e347fa4b269fb139 Mon Sep 17 00:00:00 2001 From: Stevin Wilson Date: Fri, 4 Feb 2022 15:31:51 -0500 Subject: [PATCH] Added ARTIC v4.1 primer set information --- conf/pipeline/viralrecon/genomes.config | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/conf/pipeline/viralrecon/genomes.config b/conf/pipeline/viralrecon/genomes.config index 8682942..baad834 100644 --- a/conf/pipeline/viralrecon/genomes.config +++ b/conf/pipeline/viralrecon/genomes.config @@ -51,6 +51,12 @@ params { primer_bed = 'https://github.com/artic-network/artic-ncov2019/raw/master/primer_schemes/nCoV-2019/V4/SARS-CoV-2.scheme.bed' scheme = 'SARS-CoV-2' } + '4.1' { + fasta = 'https://github.com/artic-network/artic-ncov2019/raw/master/primer_schemes/nCoV-2019/V4.1/SARS-CoV-2.reference.fasta' + gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz' + primer_bed = 'https://github.com/artic-network/artic-ncov2019/raw/master/primer_schemes/nCoV-2019/V4.1/SARS-CoV-2.scheme.bed' + scheme = 'SARS-CoV-2' + } '1200' { fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta' gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz'