diff --git a/conf/pipeline/sarek/munin.config b/conf/pipeline/sarek/munin.config index e4413f2..ff31a7f 100644 --- a/conf/pipeline/sarek/munin.config +++ b/conf/pipeline/sarek/munin.config @@ -1,4 +1,4 @@ -// Profile config names for nf-core/configs + // sarek/munin specific profile config params { // Specific nf-core/configs params @@ -6,17 +6,23 @@ params { config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs' // Specific nf-core/sarek params - annotation_cache = true - pon = '/data1/PON/vcfs/BTB.PON.vcf.gz' - pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi' - snpEff_cache = '/data1/cache/snpEff/' - vep_cache = '/data1/cache/VEP/' + annotation_cache = true + cadd_cache = true + cadd_indels = '/data1/cache/CADD/v1.4/InDels.tsv.gz' + cadd_indels_tbi = '/data1/cache/CADD/v1.4/InDels.tsv.gz.tbi' + cadd_wg_snvs = '/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz' + cadd_wg_snvs_tbi = '/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz.tbi' + pon = '/data1/PON/vcfs/BTB.PON.vcf.gz' + pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi' + snpeff_cache = '/data1/cache/snpEff/' + vep_cache = '/data1/cache/VEP/' + vep_cache_version = 95 } // Specific nf-core/sarek process configuration process { withLabel:sentieon { - module = {params.sentieon ? 'sentieon/201808.05' : null} + module = {params.sentieon ? 'sentieon/201911.00' : null} container = {params.sentieon ? null : container} } }