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Merge pull request #147 from nf-core/MaxUlysse-patch-1

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Update uppmax.config
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Maxime Garcia 2020-04-09 12:08:41 +02:00 committed by GitHub
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conf/pipeline/sarek/uppmax.config
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@ -9,9 +9,13 @@ params {
igenomeIgnore = true igenomeIgnore = true
genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle' genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle'
} }
def hostname = "hostname".execute().text.trim()
if (hostname ==~ "r.*") { if (hostname ==~ "r.*") {
params.singleCPUmem = 6400.MB params.singleCPUmem = 6400.MB
} }
if (hostname ==~ "i.*") { if (hostname ==~ "i.*") {
params.singleCPUmem = 15.GB params.singleCPUmem = 15.GB
} }