diff --git a/conf/imperial_mb.config b/conf/imperial_mb.config deleted file mode 100644 index 72bc412..0000000 --- a/conf/imperial_mb.config +++ /dev/null @@ -1,44 +0,0 @@ -//Profile config names for nf-core/configs - -params { - // Config Params - config_profile_description = 'Imperial College London - MEDBIO QUEUE - HPC Profile -- provided by nf-core/configs.' - config_profile_contact = 'NA' - config_profile_url = 'https://www.imperial.ac.uk/bioinformatics-data-science-group/resources/uk-med-bio/' - - // Resources - max_memory = 640.GB - max_cpus = 32 - max_time = 168.h -} - -executor { - $pbspro { - queueSize = 50 - } - - $local { - cpus = 2 - queueSize = 1 - memory = '32 GB' - } -} - -singularity { - enabled = true - autoMounts = true - runOptions = "-B /rds/,/rdsgpfs/,/rds/general/user/$USER/ephemeral/tmp/:/tmp,/rds/general/user/$USER/ephemeral/tmp/:/var/tmp" -} - -process { - - executor = 'pbspro' - queue = 'pqmedbio-tput' - - //queue = 'med-bio' //!! this is an alias and shouldn't be used - - //withLabel:process_large { - //queue = 'pqmedbio-large' //!! this queue is unavailable as of Feb 2022 - //} - -}