From e5b798e21f157dec8d6cc51a7b705cdc940c1022 Mon Sep 17 00:00:00 2001 From: Marc Hoeppner Date: Tue, 4 Oct 2022 14:07:44 +0200 Subject: [PATCH] Updating CCGA med to use the new Beegfs file system --- conf/ccga_med.config | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/conf/ccga_med.config b/conf/ccga_med.config index d55fde2..c9b7b44 100644 --- a/conf/ccga_med.config +++ b/conf/ccga_med.config @@ -13,8 +13,8 @@ params { singularity { enabled = true - runOptions = "-B /work_ifs -B /scratch" - cacheDir = "/work_ifs/ikmb_repository/singularity_cache/" + runOptions = "-B /work_ifs -B /scratch -B /work_beegfs" + cacheDir = "/work_beegfs/ikmb_repository/singularity_cache/" } executor { @@ -31,7 +31,7 @@ process { params { // illumina iGenomes reference file paths on RZCluster - igenomes_base = '/work_ifs/ikmb_repository/references/iGenomes/references/' + igenomes_base = '/work_beegfs/ikmb_repository/references/iGenomes/references/' saveReference = true max_memory = 250.GB max_cpus = 24