diff --git a/conf/pipeline/sarek/eddie.config b/conf/pipeline/sarek/eddie.config index 33c4e02..9629337 100644 --- a/conf/pipeline/sarek/eddie.config +++ b/conf/pipeline/sarek/eddie.config @@ -30,4 +30,22 @@ process { withName:GenotypeGVCFs { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } + withName:Mutect2 { + clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} + } + withName:MergeMutect2Stats { + clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} + } + withName:PileupSummariesForMutect2 { + clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} + } + withName:MergePileupSummaries { + clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} + } + withName:CalculateContamination { + clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} + } + withName:FilterMutect2Calls { + clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} + } }