mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-10 20:13:09 +00:00
Update eva.config
This commit is contained in:
parent
92648c1c1f
commit
e741ecb7a7
1 changed files with 2 additions and 10 deletions
|
@ -475,8 +475,8 @@ profiles {
|
||||||
1240k {
|
1240k {
|
||||||
params {
|
params {
|
||||||
// Specific nf-core/configs params
|
// Specific nf-core/configs params
|
||||||
config_profile_contact = 'James Fellows Yates (@jfy133)'
|
config_profile_contact = 'Thiseas C. Lamnidis (@TCLamnidis)'
|
||||||
config_profile_description = 'nf-core/eager big-data EVA profile provided by nf-core/configs'
|
config_profile_description = 'nf-core/eager 1240k data EVA profile provided by nf-core/configs'
|
||||||
}
|
}
|
||||||
|
|
||||||
executor {
|
executor {
|
||||||
|
@ -484,14 +484,6 @@ profiles {
|
||||||
}
|
}
|
||||||
|
|
||||||
process {
|
process {
|
||||||
|
|
||||||
beforeScript = 'export _JAVA_OPTIONS="-XX:ParallelGCThreads=1"'
|
|
||||||
|
|
||||||
maxRetries = 2
|
|
||||||
|
|
||||||
// Solution for clusterOptions comes from here: https://github.com/nextflow-io/nextflow/issues/332 + personal toMega conversion
|
|
||||||
clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G,virtual_free=${task.memory.toGiga()}G" }
|
|
||||||
|
|
||||||
// Increasing walltime for bwa to avoid unnecessary retries
|
// Increasing walltime for bwa to avoid unnecessary retries
|
||||||
withName:bwa {
|
withName:bwa {
|
||||||
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 72.h : 48.h }
|
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 72.h : 48.h }
|
||||||
|
|
Loading…
Reference in a new issue