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Update eva.config

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Thiseas C. Lamnidis 2021-10-13 13:04:41 +02:00 committed by GitHub
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commit e741ecb7a7
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1 changed files with 2 additions and 10 deletions
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conf/pipeline/eager/eva.config
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@ -475,8 +475,8 @@ profiles {
1240k { 1240k {
params { params {
// Specific nf-core/configs params // Specific nf-core/configs params
config_profile_contact = 'James Fellows Yates (@jfy133)' config_profile_contact = 'Thiseas C. Lamnidis (@TCLamnidis)'
config_profile_description = 'nf-core/eager big-data EVA profile provided by nf-core/configs' config_profile_description = 'nf-core/eager 1240k data EVA profile provided by nf-core/configs'
} }
executor { executor {
@ -484,14 +484,6 @@ profiles {
} }
process { process {
beforeScript = 'export _JAVA_OPTIONS="-XX:ParallelGCThreads=1"'
maxRetries = 2
// Solution for clusterOptions comes from here: https://github.com/nextflow-io/nextflow/issues/332 + personal toMega conversion
clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G,virtual_free=${task.memory.toGiga()}G" }
// Increasing walltime for bwa to avoid unnecessary retries // Increasing walltime for bwa to avoid unnecessary retries
withName:bwa { withName:bwa {
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 72.h : 48.h } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 72.h : 48.h }