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Create wcm.config

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Ashley S Doane 2021-03-11 13:52:11 -05:00 committed by GitHub
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singularityDir = "/athena/elementolab/scratch/reference/.singularity/singularity_images_nextflow"
params {
config_profile_description = 'Weill Cornell Medicine, Scientific Computing Unit Slurm cluster profile provided by nf-core/configs'
config_profile_contact = 'Ashley Stephen Doane, PhD (@DoaneAS)'
igenomes_base = '/athena/elementolab/scratch/reference/igenomes'
}
singularity {
enabled = true
envWhitelist='SINGULARITY_BINDPATH'
cacheDir = "/athena/elementolab/scratch/reference/.singularity/singularity_images_nextflow"
autoMounts = true
}
process {
executor = 'slurm'
queue = 'panda_physbio'
scratch = true
scratch = '/scratchLocal/`whoami`_${SLURM_JOBID}'
}
params {
max_memory = 32.GB
max_cpus = 8
max_time = 24.h
}