millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-21 16:16:04 +00:00
Code Issues Releases Packages Activity

Create wcm.config

Browse source
This commit is contained in:
Ashley S Doane 2021-03-11 13:52:11 -05:00 committed by GitHub
parent a64dfd98c2
commit e7f8189dfc
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 28 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

28
conf/wcm.config Normal file
View file

@ -0,0 +1,28 @@
singularityDir = "/athena/elementolab/scratch/reference/.singularity/singularity_images_nextflow"
params {
config_profile_description = 'Weill Cornell Medicine, Scientific Computing Unit Slurm cluster profile provided by nf-core/configs'
config_profile_contact = 'Ashley Stephen Doane, PhD (@DoaneAS)'
igenomes_base = '/athena/elementolab/scratch/reference/igenomes'
}
singularity {
enabled = true
envWhitelist='SINGULARITY_BINDPATH'
cacheDir = "/athena/elementolab/scratch/reference/.singularity/singularity_images_nextflow"
autoMounts = true
}
process {
executor = 'slurm'
queue = 'panda_physbio'
scratch = true
scratch = '/scratchLocal/`whoami`_${SLURM_JOBID}'
}
params {
max_memory = 32.GB
max_cpus = 8
max_time = 24.h
}