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@ -18,7 +18,7 @@ We also highly recommend specifying a location of a cache directory to store sin
All of the intermediate files required to run the pipeline will be stored in the `work/` directory. It is recommended to delete this directory after the pipeline has finished successfully because it can get quite large, and all of the main output files will be saved in the `results/` directory anyway. All of the intermediate files required to run the pipeline will be stored in the `work/` directory. It is recommended to delete this directory after the pipeline has finished successfully because it can get quite large, and all of the main output files will be saved in the `results/` directory anyway.
The config contains a `cleanup` command that removes the `work/` directory automatically once the pipeline has completeed successfully. If the run does not complete successfully then the `work/` dir should be removed manually to save storage space. The config contains a `cleanup` command that removes the `work/` directory automatically once the pipeline has completeed successfully. If the run does not complete successfully then the `work/` dir should be removed manually to save storage space.
This configuration will automatically choose the correct SLURM queue (short,medium,long) depending on the time required by each process. If there are This configuration will automatically choose the correct SLURM queue (short,medium,long) depending on the time required by each process. If there are
high memory requirements (>240GB), e.g. using MALT, use the 'mem' profile: high memory requirements (>240GB), e.g. using MALT, use the 'mem' profile:
```bash ```bash