mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-22 00:26:03 +00:00
Merge pull request #267 from jfy133/eva-eager-subprofiles
Add genotyping_ug to SGE fixes for EAGER @ EVA
This commit is contained in:
commit
e8bb6d0dab
1 changed files with 13 additions and 1 deletions
|
@ -124,6 +124,10 @@ process {
|
|||
clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" }
|
||||
errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'retry' : 'ignore' }
|
||||
}
|
||||
|
||||
withName: genotyping_ug {
|
||||
clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" }
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
@ -259,6 +263,10 @@ profiles {
|
|||
withName: circulargenerator {
|
||||
clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" }
|
||||
}
|
||||
|
||||
withName: genotyping_ug {
|
||||
clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" }
|
||||
}
|
||||
|
||||
withName: preseq {
|
||||
clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" }
|
||||
|
@ -398,7 +406,11 @@ profiles {
|
|||
withName: circulargenerator {
|
||||
clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }
|
||||
}
|
||||
|
||||
|
||||
withName: genotyping_ug {
|
||||
clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }
|
||||
}
|
||||
|
||||
withName: preseq {
|
||||
clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }
|
||||
errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'retry' : 'ignore' }
|
||||
|
|
Loading…
Reference in a new issue