From e95196451fe850201e0b471e2b3cc81d78e210b3 Mon Sep 17 00:00:00 2001 From: noirot Date: Tue, 26 Nov 2019 14:47:23 +0100 Subject: [PATCH] correct md to pass linter --- docs/genotoul.md | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/docs/genotoul.md b/docs/genotoul.md index 831e90e..5f46f21 100644 --- a/docs/genotoul.md +++ b/docs/genotoul.md @@ -54,6 +54,7 @@ Create launch script `nfcore-rnaseq.sh` : module load bioinfo/nfcore-Nextflow-v19.04.0 nextflow run nf-core/methylseq -profile genotoul,test ``` + Launch on the cluster with sbatch: ```bash @@ -63,14 +64,15 @@ sbatch nfcore-rnaseq.sh ## Mounted directory By default, available mount points are : - - /bank - - /home - - /save - - /work - - /work2 +- /bank +- /home +- /save +- /work +- /work2 To have access to specific other mount point (such as nosave or project) you can add a config profile file with option `-profile` and wich contain: + ```bash singularity.runOptions = '-B /diretory/to/mount' ```