diff --git a/conf/eva.config b/conf/eva.config index 432b667..07ce226 100644 --- a/conf/eva.config +++ b/conf/eva.config @@ -17,6 +17,7 @@ process { executor = 'sge' penv = 'smp' queue = 'all.q' + clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G" } } executor { @@ -36,6 +37,7 @@ profiles { process { queue = 'archgen.q' + clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G" } } singularity { diff --git a/conf/pipeline/eager/eva.config b/conf/pipeline/eager/eva.config index eccccbb..4c6052c 100644 --- a/conf/pipeline/eager/eva.config +++ b/conf/pipeline/eager/eva.config @@ -14,7 +14,7 @@ process { maxRetries = 2 // Solution for clusterOptions comes from here: https://github.com/nextflow-io/nextflow/issues/332 + personal toMega conversion - clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G,virtual_free=${task.memory.toGiga()}G" } + clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G" } withLabel:'sc_tiny'{ cpus = { check_max( 1, 'cpus' ) }