From d7d9951dbf002fbc7e4aaaa207bd38163fa4d2dd Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Mon, 28 Feb 2022 14:00:16 +0100
Subject: [PATCH 1/2] Insert h_vmem for all nf-core pipelines

---
 conf/eva.config | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/conf/eva.config b/conf/eva.config
index 432b667..07ce226 100644
--- a/conf/eva.config
+++ b/conf/eva.config
@@ -17,6 +17,7 @@ process {
     executor = 'sge'
     penv = 'smp'
     queue = 'all.q'
+    clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G" }
 }
 
 executor {
@@ -36,6 +37,7 @@ profiles {
 
       process {
         queue = 'archgen.q'
+        clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G" }
       }
 
       singularity {

From 46f046d4772c71f13d9ed46be0a51b3a3fc72841 Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Mon, 28 Feb 2022 14:00:37 +0100
Subject: [PATCH 2/2] Update eva.config

---
 conf/pipeline/eager/eva.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/pipeline/eager/eva.config b/conf/pipeline/eager/eva.config
index eccccbb..4c6052c 100644
--- a/conf/pipeline/eager/eva.config
+++ b/conf/pipeline/eager/eva.config
@@ -14,7 +14,7 @@ process {
   maxRetries = 2
 
   // Solution for clusterOptions comes from here: https://github.com/nextflow-io/nextflow/issues/332 + personal toMega conversion
-  clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G,virtual_free=${task.memory.toGiga()}G" }
+  clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G" }
 
   withLabel:'sc_tiny'{
     cpus = { check_max( 1, 'cpus' ) }