diff --git a/conf/pipeline/eager/eva.config b/conf/pipeline/eager/eva.config index 2e07d57..fa7667d 100644 --- a/conf/pipeline/eager/eva.config +++ b/conf/pipeline/eager/eva.config @@ -61,7 +61,7 @@ process { // Fixes for SGE and Java incompatibility due to Java using more memory than you tell it to use withName: makeSeqDict { - clusterOptions = { "-S /bin/bash -v JAVA_OPTS='-XX:ParallelGCThreads=1' -l h_vmem=${(task.memory.toGiga() + 3)}G,virtual_free=${(task.memory.toGiga() + 3)}G" } + clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" } } withName: fastqc { @@ -212,4 +212,4 @@ profiles { bwaalnl = 16500 } } -} \ No newline at end of file +}