diff --git a/conf/pipeline/eager/shh.config b/conf/pipeline/eager/shh.config index bdc3470..2c7ec82 100644 --- a/conf/pipeline/eager/shh.config +++ b/conf/pipeline/eager/shh.config @@ -83,6 +83,12 @@ profiles { time = 1440.h queue = { task.memory > 756.GB ? 'supercruncher' : 'long' } } + + withName: hostremoval_input_fastq { + cpus = { check_max( 1, 'cpus' ) } + memory = { check_max( 32.GB * task.attempt, 'memory' ) } + time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 2.h } + } withLabel:'sc_tiny'{ cpus = { check_max( 1, 'cpus' ) }