From eb9012919cfa8e2cfb847b6f420a90c902149bbd Mon Sep 17 00:00:00 2001
From: FriederikeHanssen <friederike.hanssen@qbic.uni-tuebingen.de>
Date: Wed, 10 Mar 2021 11:16:18 +0100
Subject: [PATCH] Set values for processes with max_mem/max_cpus

---
 conf/pipeline/sarek/cfc.config | 24 ++++++++++++++++++++++++
 pipeline/sarek.config          |  3 +++
 2 files changed, 27 insertions(+)
 create mode 100644 conf/pipeline/sarek/cfc.config

diff --git a/conf/pipeline/sarek/cfc.config b/conf/pipeline/sarek/cfc.config
new file mode 100644
index 0000000..6686c3c
--- /dev/null
+++ b/conf/pipeline/sarek/cfc.config
@@ -0,0 +1,24 @@
+// Profile config names for nf-core/configs
+
+params {
+  // Specific nf-core/configs params
+  config_profile_contact = 'Friederike Hanssen (@FriederikeHanssen'
+  config_profile_description = 'nf-core/sarek CFC profile provided by nf-core/configs'
+}
+
+// Specific nf-core/sarek process configuration
+process {
+  withName:'StrelkaSingle|Strelka|StrelkaBP|MantaSingle|Manta' {
+    memory = {check_resource(128.GB)}
+    cpus = 16
+  }
+  withName:'MSIsensor_scan|MSIsensor_msi' {
+    memory = {check_resource(128.GB)}
+  }
+  withName:BamQC {
+    memory = {check_resource(372.GB)}
+  }
+  withName:MapReads{
+    cpus = 48
+  }
+}
\ No newline at end of file
diff --git a/pipeline/sarek.config b/pipeline/sarek.config
index 4ef48da..dc03e30 100644
--- a/pipeline/sarek.config
+++ b/pipeline/sarek.config
@@ -12,4 +12,7 @@ profiles {
   munin { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/munin.config" }
   uppmax { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/uppmax.config" }
   icr_davros { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/icr_davros.config" }
+  cfc { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/cfc.config" }
+  cfc_dev { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/cfc.config" }
+
 }
\ No newline at end of file