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Set values for processes with max_mem/max_cpus

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FriederikeHanssen 2021-03-10 11:16:18 +01:00
parent bb8e82e9c7
commit eb9012919c
2 changed files with 27 additions and 0 deletions
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24
conf/pipeline/sarek/cfc.config Normal file
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@ -0,0 +1,24 @@
// Profile config names for nf-core/configs
params {
// Specific nf-core/configs params
config_profile_contact = 'Friederike Hanssen (@FriederikeHanssen'
config_profile_description = 'nf-core/sarek CFC profile provided by nf-core/configs'
}
// Specific nf-core/sarek process configuration
process {
withName:'StrelkaSingle|Strelka|StrelkaBP|MantaSingle|Manta' {
memory = {check_resource(128.GB)}
cpus = 16
}
withName:'MSIsensor_scan|MSIsensor_msi' {
memory = {check_resource(128.GB)}
}
withName:BamQC {
memory = {check_resource(372.GB)}
}
withName:MapReads{
cpus = 48
}
}

3
pipeline/sarek.config
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@ -12,4 +12,7 @@ profiles {
munin { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/munin.config" } munin { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/munin.config" }
uppmax { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/uppmax.config" } uppmax { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/uppmax.config" }
icr_davros { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/icr_davros.config" } icr_davros { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/icr_davros.config" }
cfc { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/cfc.config" }
cfc_dev { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/cfc.config" }
} }