diff --git a/docs/shh.md b/docs/shh.md index 67cf3b9..aff3f21 100644 --- a/docs/shh.md +++ b/docs/shh.md @@ -10,7 +10,8 @@ To use, run the pipeline with `-profile shh`. This will download and launch the however this will likely change to a read-only directory in the future that will be managed by IT. -Note that **the configuration file is currently optimised for `nf-core/eager`**. It will submit to the short queue but with a walltime of 2 hours. +This configuration will automatically choose the correct SLURM queue (`short`,`medium`,`long`,`supercruncher`) depending on the time and memory required by each process. +Please note that there is no `supercruncher` queue on CDAG. >NB: You will need an account and VPN access to use the cluster at MPI-SHH in order to run the pipeline. If in doubt contact IT.