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Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
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James A. Fellows Yates 2022-09-15 09:10:29 +02:00 committed by GitHub
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2 changed files with 6 additions and 6 deletions
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6
conf/hki.config
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@ -7,7 +7,7 @@ params {
profiles { profiles {
apate { apate {
params { params {
config_profile_description = 'apate HKI cluster profile provided by nf-core/configs.' config_profile_description = 'apate HKI cluster profile provided by nf-core/configs'
config_profile_contact = 'James Fellows Yates (@jfy133)' config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://leibniz-hki.de' config_profile_url = 'https://leibniz-hki.de'
max_memory = 128.GB max_memory = 128.GB
@ -38,7 +38,7 @@ profiles {
aither { aither {
params { params {
config_profile_description = 'apate HKI cluster profile provided by nf-core/configs.' config_profile_description = 'aither HKI cluster profile provided by nf-core/configs'
config_profile_contact = 'James Fellows Yates (@jfy133)' config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://leibniz-hki.de' config_profile_url = 'https://leibniz-hki.de'
max_memory = 128.GB max_memory = 128.GB
@ -69,7 +69,7 @@ profiles {
arges { arges {
params { params {
config_profile_description = 'apate HKI cluster profile provided by nf-core/configs.' config_profile_description = 'arges HKI cluster profile provided by nf-core/configs'
config_profile_contact = 'James Fellows Yates (@jfy133)' config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://leibniz-hki.de' config_profile_url = 'https://leibniz-hki.de'
max_memory = 64.GB max_memory = 64.GB

6
docs/hki.md
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@ -1,10 +1,10 @@
# nf-core/configs: HKI Configuration # nf-core/configs: HKI Configuration
All nf-core pipelines have been successfully configured for use on clusters at the [Leibniz Institute for Natural Product Research and Infection Biology Hans Knöll Institute](https://www.leibniz-hki.de/en/). All nf-core pipelines have been successfully configured for use on clusters at the [Leibniz Institute for Natural Product Research and Infection Biology Hans Knöll Institute](https://www.leibniz-hki.de/en).
To use, run the pipeline with `-profile hki,<cluster>`. This will download and launch the [`hki.config`](../conf/hki.config) which contains specific profiles for each cluter. The number of parallel jobs that run is currently limited to 8. To use, run the pipeline with `-profile hki,<cluster>`. This will download and launch the [`hki.config`](../conf/hki.config) which contains specific profiles for each cluster. The number of parallel jobs that run is currently limited to 8.
The profiles currently available are: The currently available profiles are:
- apate (uses singularity, cleanup set to true by default) - apate (uses singularity, cleanup set to true by default)
- arges (uses singularity, cleanup set to true by default) - arges (uses singularity, cleanup set to true by default)