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# [![nf-core/configs](docs/images/nfcore-configs_logo.png "nf-core/configs")](https://github.com/nf-core/configs) # [![nf-core/configs](docs/images/nfcore-configs_logo.png "nf-core/configs")](https://github.com/nf-core/configs) <!-- omit in toc -->
[![Lint Status](https://github.com/nf-core/configs/workflows/Configs%20tests/badge.svg)](https://github.com/nf-core/configs/workflows/Configs%20tests/badge.svg) [![Lint Status](https://github.com/nf-core/configs/workflows/Configs%20tests/badge.svg)](https://github.com/nf-core/configs/workflows/Configs%20tests/badge.svg)
@ -6,21 +6,20 @@ A repository for hosting Nextflow configuration files containing custom paramete
## Table of contents ## Table of contents
* [<img src="docs/images/nfcore-configs_logo.png" alt="nf-core/configs" title="nf-core/configs">](#img-srcdocsimagesnfcore-configs_logopng-altnf-coreconfigs-titlenf-coreconfigs) * [Table of contents](#table-of-contents)
* [Table of contents](#table-of-contents) * [Using an existing config](#using-an-existing-config)
* [Using an existing config](#using-an-existing-config)
* [Configuration and parameters](#configuration-and-parameters) * [Configuration and parameters](#configuration-and-parameters)
* [Offline usage](#offline-usage) * [Offline usage](#offline-usage)
* [Adding a new config](#adding-a-new-config) * [Adding a new config](#adding-a-new-config)
* [Checking user hostnames](#checking-user-hostnames) * [Checking user hostnames](#checking-user-hostnames)
* [Testing](#testing) * [Testing](#testing)
* [Documentation](#documentation) * [Documentation](#documentation)
* [Uploading to nf-core/configs](#uploading-to-nf-coreconfigs) * [Uploading to nf-core/configs](#uploading-to-nf-coreconfigs)
* [Adding a new pipeline-specific config](#adding-a-new-pipeline-specific-config) * [Adding a new pipeline-specific config](#adding-a-new-pipeline-specific-config)
* [Pipeline-specific documentation](#pipeline-specific-documentation) * [Pipeline-specific documentation](#pipeline-specific-documentation)
* [Enabling pipeline-specific configs within a pipeline](#enabling-pipeline-specific-configs-within-a-pipeline) * [Enabling pipeline-specific configs within a pipeline](#enabling-pipeline-specific-configs-within-a-pipeline)
* [Create the pipeline-specific nf-core/configs files](#create-the-pipeline-specific-nf-coreconfigs-files) * [Create the pipeline-specific nf-core/configs files](#create-the-pipeline-specific-nf-coreconfigs-files)
* [Help](#help) * [Help](#help)
## Using an existing config ## Using an existing config