diff --git a/conf/azurebatch.config b/conf/azurebatch.config index f12ed33..b2b4a54 100644 --- a/conf/azurebatch.config +++ b/conf/azurebatch.config @@ -9,7 +9,6 @@ params { batch_key = false storage_name = 'platinumgenomes' sas_token = 'sv=2019-02-02&se=2050-01-01T08%3A00%3A00Z&si=prod&sr=c&sig=FFfZ0QaDcnEPQmWsshtpoYOjbzd4jtwIWeK%2Fc4i9MqM%3D' - work_dir = false } docker { @@ -24,4 +23,3 @@ azure.batch.autoPoolMode = true azure.storage.accountName = params.storage_name azure.storage.sasToken = params.sas_token process.executor = 'azurebatch' -workDir = params.work_dir diff --git a/docs/azurebatch.md b/docs/azurebatch.md index 4ed082b..85ca163 100644 --- a/docs/azurebatch.md +++ b/docs/azurebatch.md @@ -25,11 +25,10 @@ The Azure Blob Storage name. Example is currently [Illumina Platinum Genomes](ht The Azure Blob Storage shared access signature token. Example is currently [Illumina Platinum Genomes](https://docs.microsoft.com/en-us/azure/open-datasets/dataset-illumina-platinum-genomes?tabs=azure-storage). **This must be changed to your specific storage account.** -## Optional Parameters -### `--work_dir` +### `-w` -The Azure Blob container to be used as Nextflow work directory. Can also be specified with (`-w az://work`). +The Azure Blob container to be used as Nextflow work directory (`-w az://work`). ## Azure Batch Setup