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fix container/module collision

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This commit is contained in:
MaxUlysse 2019-11-20 16:03:27 +01:00
parent 9a57e487d7
commit edde1ee64d
1 changed files with 7 additions and 5 deletions
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10
conf/pipeline/sarek/munin.config
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@ -18,8 +18,10 @@ params {
vep_cache = '/data1/cache/VEP/'
}
// Specific nf-core/sarek configuration
withLabel:sentieon {
module = {params.sentieon ? 'sentieon/201808.05' : ''}
if (params.sentieon) container = ''
// Specific nf-core/sarek process configuration
process {
withLabel:sentieon {
beforeScript = {params.sentieon ? 'module load sentieon/201808.05' : ''}
container = {params.sentieon ? '' : 'nfcore/sarek:dev'}
}
}