millironx/nf-configs
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add aws_tower profile

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ggabernet 2021-07-03 12:17:21 +02:00
parent d59d099fe8
commit ee2e8392ab
4 changed files with 28 additions and 0 deletions
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1
README.md
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@ -96,6 +96,7 @@ Currently documentation is available for the following systems:
* [ABIMS](docs/abims.md)
* [AWSBATCH](docs/awsbatch.md)
* [AWS_TOWER](docs/aws_tower.md)
* [BIGPURPLE](docs/bigpurple.md)
* [BI](docs/bi.md)
* [BINAC](docs/binac.md)

21
conf/aws_tower.config Normal file
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@ -0,0 +1,21 @@
//Nextflow config file for running on AWS batch
params {
config_profile_description = 'AWS Batch with Tower Profile'
config_profile_contact = 'Gisela Gabernet (@ggabernet)'
config_profile_url = 'https://aws.amazon.com/batch/'
}
timeline {
overwrite = true
}
report {
overwrite = true
}
trace {
overwrite = true
}
dag {
overwrite = true
}
process.executor = 'awsbatch'

5
docs/aws_tower.md Normal file
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@ -0,0 +1,5 @@
# nf-core/configs: AWS Batch with Tower Configuration
To be used when submitting jobs to AWS Batch by using Tower Forge. If you are not using Tower Forge, consider using the profile `awsbatch` where you can directly specify the Batch queue, AWS region and AWS cli path.
This profile defines `awsbatch` as executor, and allows `overwrite` of `trace`, `timeline`, `report` and `dag` to allow resuming pipelines.

1
nfcore_custom.config
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@ -12,6 +12,7 @@
profiles {
abims { includeConfig "${params.custom_config_base}/conf/abims.config" }
awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
aws_tower { includeConfig "${params.custom_config_base}/conf/aws_tower.config" }
bi { includeConfig "${params.custom_config_base}/conf/bi.config" }
bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
binac { includeConfig "${params.custom_config_base}/conf/binac.config" }