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Rogan Grant 2021-07-28 13:34:49 -05:00
parent 9df267a192
commit f104250ff4
1 changed files with 9 additions and 5 deletions
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14
conf/nu_genomics.config
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@ -1,15 +1,17 @@
//Profile config names for nf-core/configs //Profile config names for nf-core/configs
params { params
{
config_profile_description = 'Northwestern University Quest HPC (Genomics Nodes) config provided by nf-core/configs' config_profile_description = 'Northwestern University Quest HPC (Genomics Nodes) config provided by nf-core/configs'
config_profile_contact = 'Rogan Grant / Janna Nugent (@RoganGrant, @NUjon)' config_profile_contact = 'Rogan Grant / Janna Nugent (@RoganGrant, @NUjon)'
config_profile_url = 'https://www.it.northwestern.edu/research/user-services/quest/' config_profile_url = 'https://www.it.northwestern.edu/research/user-services/quest/'
max_memory = 190.GB max_memory = 190.GB
max_cpus = 40 max_cpus = 40
max_time = 240.h max_time = 240.h
igenomes_base = "/projects/genomicsshare/igenomes" #pending igenomes_base = "/projects/genomicsshare/igenomes"
} }
singularity { singularity
{
enabled = true enabled = true
autoMounts = true autoMounts = true
queue = {task.time < 48.h ? 'genomics' : 'genomicslong'} queue = {task.time < 48.h ? 'genomics' : 'genomicslong'}
@ -17,11 +19,13 @@ singularity {
cacheDir = "/projects/b1042/singularity_cache" cacheDir = "/projects/b1042/singularity_cache"
} }
process { process
{
beforeScript = 'module load singularity/latest graphviz/2.40.1' beforeScript = 'module load singularity/latest graphviz/2.40.1'
executor = 'slurm' executor = 'slurm'
} }
executor { executor
{
submitRateLimit = '1sec' submitRateLimit = '1sec'
} }