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print the error message before throwing Exception

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This commit is contained in:
Piotr Faba 2020-05-27 19:14:43 +02:00
parent 3c695ba71c
commit f139750bf4
1 changed files with 3 additions and 2 deletions
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5
conf/bi.config
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@ -10,8 +10,9 @@ includeConfig params.globalConfig
def determine_global_config() { def determine_global_config() {
if( System.getenv('NXF_GLOBAL_CONFIG') == null) if( System.getenv('NXF_GLOBAL_CONFIG') == null)
{ {
System.err.println("Environment variable NXF_GLOBAL_CONFIG is missing. Set it to point to global.config file") def errorMessage = "ERROR: Environment variable NXF_GLOBAL_CONFIG is missing. Set it to point to global.config file."
throw new Exception("Environment variable NXF_GLOBAL_CONFIG is missing. Set it to point to global.config file") System.err.println(errorMessage)
throw new Exception(errorMessage)
} }
return System.getenv('NXF_GLOBAL_CONFIG') return System.getenv('NXF_GLOBAL_CONFIG')
} }