millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-12-31 11:42:12 -05:00
Code Issues Releases Packages Activity

Merge branch 'nf-core:master' into cfc

Browse source
This commit is contained in:
FriederikeHanssen 2021-10-04 18:04:18 +02:00 committed by GitHub
commit f1756ba121
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 4 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
conf/cbe.config
View file

@ -8,8 +8,10 @@ params {
process {
executor = 'slurm'
queue = { task.memory <= 170.GB ? 'c' : 'm' }
clusterOptions = { task.time <= 1.h ? '--qos rapid' : task.time <= 8.h ? '--qos short': task.time <= 48.h ? '--qos medium' : '--qos long' }
module = 'anaconda3/2019.10'
// --signal option will be handled by nextflow after 21.10.0 release (see https://github.com/nextflow-io/nextflow/issues/2163)
clusterOptions = { '--signal B:USR2 ' << ( (queue == 'c' & task.time <= 1.h) ? '--qos rapid' : ( task.time <= 8.h ? '--qos short': ( task.time <= 48.h ? '--qos medium' : '--qos long' ) ) ) }
}
singularity {
@ -20,6 +22,6 @@ singularity {
params {
params.max_time = 14.d
params.max_cpus = 36
params.max_memory = 4.TB
params.max_memory = 1800.GB
igenomes_base = '/resources/references/igenomes'
}