From f26c465bd431d4cfaa58c53038605c42e7c94464 Mon Sep 17 00:00:00 2001 From: Harshil Patel Date: Mon, 17 Jan 2022 11:27:10 +0000 Subject: [PATCH] Add Nextclade genome details to viralrecon genome config --- conf/pipeline/viralrecon/genomes.config | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/conf/pipeline/viralrecon/genomes.config b/conf/pipeline/viralrecon/genomes.config index 3e3e299..16d2cb0 100644 --- a/conf/pipeline/viralrecon/genomes.config +++ b/conf/pipeline/viralrecon/genomes.config @@ -13,10 +13,16 @@ params { // Please use 'MN908947.3' if possible because all primer sets are available / have been pre-prepared relative to that assembly fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_045512.2/GCF_009858895.2_ASM985889v3_genomic.200409.fna.gz' gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_045512.2/GCF_009858895.2_ASM985889v3_genomic.200409.gff.gz' + nextclade_dataset_name = 'sars-cov-2' + nextclade_dataset_reference = 'MN908947' + nextclade_dataset_tag = '2022-01-05T19:54:31Z' } 'MN908947.3' { fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.fna.gz' gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz' + nextclade_dataset_name = 'sars-cov-2' + nextclade_dataset_reference = 'MN908947' + nextclade_dataset_tag = '2022-01-05T19:54:31Z' primer_sets { artic { '1' {