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Merge pull request #189 from nf-core/TCLamnidis-patch-1

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Move sdag queue specification block in sdag profile
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James A. Fellows Yates 2020-11-18 13:16:54 +01:00 committed by GitHub
commit f3c7b36e3d
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1 changed files with 6 additions and 4 deletions
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conf/shh.config
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@ -20,7 +20,6 @@ singularity {
process { process {
executor = 'slurm' executor = 'slurm'
queue = { task.memory > 756.GB || task.cpus > 64 ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' }
} }
executor { executor {
@ -39,9 +38,12 @@ profiles {
} }
sdag { sdag {
params { params {
config_profile_description = 'SDAG MPI-SHH profile, provided by nf-core/configs.' config_profile_description = 'SDAG MPI-SHH profile, provided by nf-core/configs.'
max_memory = 2.TB max_memory = 2.TB
max_cpus = 128 max_cpus = 128
}
process {
queue = { task.memory > 756.GB || task.cpus > 64 ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' }
} }
} }
} }