diff --git a/docs/ucl_myriad.md b/docs/ucl_myriad.md index 4d32658..1884a48 100644 --- a/docs/ucl_myriad.md +++ b/docs/ucl_myriad.md @@ -16,12 +16,11 @@ This can be done with the following commands: ## Load Singularity environment modules - these commands can be placed in your ~/.bashrc also module add java/openjdk-11/11.0.1 module add singularity-env/1.0.0 - ``` Then set the correct configuration of the cache directories, where is replaced with you credentials which you can find by entering `whoami` into the terminal once you are logged into myriad. Once you have added your credentials save these lines into your .bashrc file in the base directory (e.g. /home//.bashrc): -``` +```bash # Set all the Singularity cache dirs to Scratch export SINGULARITY_CACHEDIR=/home//Scratch/.singularity/ export SINGULARITY_TMPDIR=/home//Scratch/.singularity/tmp @@ -47,6 +46,6 @@ mv nextflow ~/bin/nextflow Then make sure that your bin PATH is executable, by placing the following line in your .bashrc: -``` +```bash export PATH=$PATH:/home//bin -``` \ No newline at end of file +```